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Yau, S. S., N. Ye, H. S. Sarjoughian, D. Huang, A. Roontiva, M. Gokce Baydogan, and M. A. Muqsith, "Toward Development of Adaptive Service-Based Software Systems", IEEE Transactions on Services Computing, vol. 2, pp. 247-260, 2009.
Baydogan, M. Gokce, and G. Runger, "Time series representation and similarity based on local autopatterns", Data Mining and Knowledge Discovery, vol. 30, issue 2, pp. 476–509, 03/2016.
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Ekim, T., B. Ries, D. de Werra, and , "Split-critical and uniquely split-colorable graphs", Discrete Mathematics and Theoretical Computer Science, vol. 12, no. 5, pp. 1–24, 2010.
Demange, M., T. Ekim, B. Ries, and C. Tanasescu, "On some applications of the selective graph coloring problem", European Journal of Operational Research, vol. 240, pp. 307-314, 2015.
Deng, H., M. Gokce Baydogan, and G. Runger, "SMT: Sparse multivariate tree", Statistical Analysis and Data Mining, vol. 7, issue 1, pp. 53-69, 02/2014.
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Bonomo, F., D. Cornaz, T. Ekim, and B. Ries, "Perfectness of clustered graphs", Discrete Optimization, vol. 10, no. 4: Elsevier, pp. 296–303, 2013.
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Ray, S., T. Boyaci, and N. Aras, "Optimal prices and trade-in rebates for durable, remanufacturable products", Manufacturing & Service Operations Management, vol. 7, no. 3: INFORMS, pp. 208–228, 2005.
Taşkın, Z. C., C. J. Smith, E. H. Romeijn, and J. F. Dempsey, "Optimal Multileaf Collimator Leaf Sequencing in IMRT Treatment Planning", Operations Research, vol. 58, no. 3, pp. 674–690, 2010.
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Baydogan, M. Gokce, and G. Runger, "Learning a symbolic representation for multivariate time series classification", Data Mining and Knowledge Discovery, vol. 29, issue 2: Springer US, pp. 400-422, 03/2015.
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Men, C., E. H. Romeijn, Z. C. Taşkın, and J. F. Dempsey, "An Exact Approach to Direct Aperture Optimization in IMRT Treatment Planning", Physics in Medicine and Biology, vol. 52, no. 24, pp. 7333-7352, 2007.
Ekşioğlu, M., E. Lammers, S. Dye, and R. Raftery, "Ergonomic Evaluation Of OCS Audit Station", Proceedings of XIX Annual International Occupational Ergonomics and Safety Conference (CD-ROM), pp. 403–409, 2005.
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de Werra, D., T. Ekim, and C. Raess, "Construction of sports schedules with multiple venues", Discrete Applied Mathematics, vol. 154, no. 1: North-Holland, pp. 47–58, 2006.
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Baydogan, M. Gokce, G. Runger, and E. Tuv, "A Bag-of-Features Framework to Classify Time Series", IEEE Transactions on Pattern Analysis and Machine Intelligence, vol. 35, pp. 2796-2802, 2013.